|
Pairwise sequence scores | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1381 | hla1728 | HQ2527A | Hbo3094 | HVO_1727 | hla0660 | HQ3410A | HVO_0158 | Hbo1282 | rrnAC0681 | VNG2243 | Hmu3142 | Hut1951 | NP1064A |
1116 | hla1728 | 1369 | 1268 | 1274 | 1274 | 1052 | 1030 | 1081 | 1079 | 1069 | 1048 | 1045 | 1058 | 1068 |
1070 | HQ2527A | 1268 | 1365 | 1288 | 1239 | 1022 | 993 | 1068 | 1047 | 1047 | 1027 | 1041 | 1033 | 1041 |
1114 | Hbo3094 | 1274 | 1288 | 1374 | 1288 | 1037 | 1009 | 1086 | 1065 | 1074 | 1061 | 1050 | 1046 | 1065 |
1105 | HVO_1727 | 1274 | 1239 | 1288 | 1376 | 1030 | 1031 | 1081 | 1074 | 1071 | 1039 | 1042 | 1030 | 1043 |
1186 | hla0660 | 1052 | 1022 | 1037 | 1030 | 1358 | 1119 | 1180 | 1143 | 1127 | 1126 | 1152 | 1139 | 1146 |
1233 | HQ3410A | 1030 | 993 | 1009 | 1031 | 1119 | 1374 | 1227 | 1202 | 1132 | 1180 | 1189 | 1181 | 1203 |
1292 | HVO_0158 | 1081 | 1068 | 1086 | 1081 | 1180 | 1227 | 1390 | 1272 | 1201 | 1238 | 1221 | 1228 | 1247 |
1273 | Hbo1282 | 1079 | 1047 | 1065 | 1074 | 1143 | 1202 | 1272 | 1389 | 1174 | 1206 | 1213 | 1209 | 1226 |
1243 | rrnAC0681 | 1069 | 1047 | 1074 | 1071 | 1127 | 1132 | 1201 | 1174 | 1366 | 1218 | 1273 | 1221 | 1235 |
1283 | VNG2243 | 1048 | 1027 | 1061 | 1039 | 1126 | 1180 | 1238 | 1206 | 1218 | 1371 | 1282 | 1265 | 1282 |
1298 | Hmu3142 | 1045 | 1041 | 1050 | 1042 | 1152 | 1189 | 1221 | 1213 | 1273 | 1282 | 1376 | 1318 | 1317 |
1287 | Hut1951 | 1058 | 1033 | 1046 | 1030 | 1139 | 1181 | 1228 | 1209 | 1221 | 1265 | 1318 | 1368 | 1334 |
1309 | NP1064A | 1068 | 1041 | 1065 | 1043 | 1146 | 1203 | 1247 | 1226 | 1235 | 1282 | 1317 | 1334 | 1382 |
189 symbols consensus MTDPKDTINIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFR #oth .33.111.3.1..............111.2..1...11.11........12..1...... hla1728 ::N:A:S:E:Q::::::::::::::EAL:E::P:::FN:DN:::::::::E::A:::::: HQ2527A :SA:A:S:E:Q::::::::::::::EAL:E::P:::FN:DN:::::::::E::A:::::: Hbo3094 :SA:A:S:E:Q::::::::::::::EAL:D::P:::FN:DN::::::::::::A:::::: HVO_1727 :SG:A:S:E:Q::::::::::::::EAL:D::P:::FN:DN::::::::::::A:::::: hla0660 :::::E::T::::::::::::::::::::::::::::::::::::::::T:::::::::: HQ3410A ::::::::::::::::::::::::::::::::::::::::::::::::::K::::::::: HVO_0158 ::::::::::::::::::::::::::::::::::::::::::::::::::E::::::::: Hbo1282 ::::::::::::::::::::::::::::::::::::::::::::::::::E::::::::: rrnAC0681 :V:::ES:D::::::::::::::::E:::::::::::::::::::::::::::::::::: VNG2243 :::::E:::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu3142 :V:::E:::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1951 :V:::E::::::::::::::::::::::::::::::::::::::::::::E::::::::: NP1064A :Q:::E::::::::::::::::::::::::::::::::::::::::::::E::::::::: consensus SGKIVCTGAKSTDDVHESLRIVFDKLRDLQIPVDDDPEITVQNIVTSADLGRNLNLNAIA #oth .........1.121.121.511.21..3.5.21222.1.1.....1.....34.....1. hla1728 :::::::::::I:::::A:G:I:E:::G:::::EE::::::::::S:::::H::::::L: HQ2527A :::::::::::IN:::DA:G:I:E:::G:S::::E::::::::::S:::::HT:::::L: Hbo3094 :::::::::::I:::::A:G:I:::::G:S::::E::::::::::S:::::H::::::L: HVO_1727 :::::::::::I::::DA:G:I:::::E:K:::::E:::::::::S:::::H::::::L: hla0660 :::::::::N:I:A:::::A::::E::G::::I:-::::::::::::::::ES::::::: HQ3410A ::::::::::::T::R:::H:::::::::R:::S:N:D:::::::::::::ED::::::: HVO_0158 :::::::::::::::::::E:::::::E:::::::::::::::::::::::E:::::::: Hbo1282 :::::::::::::::::::NL::::::A:::::::E:D:::::::::::::::::::::: rrnAC0681 ::::::::::::::::Q::::::::::::N:Q:::::::V:::::S:::::SS::::::: VNG2243 :::::::::::::::::::::::::::E:S:K:E:::::V::::::::::::Q::::::: Hmu3142 ::::::::::::::::Q::::::::::::N:Q:::::::V::::::::::::T::::::: Hut1951 :::::::::::::::::::::::G:::::E:Q::E::::V:::::::::::::::::::: NP1064A :::::::::::::::::::::::::::::E:Q::E::::V:::::::::::::::::::: consensus IGLGLENIEYEPEQFPGLVYRLDEPDVVALLFGSGKLVITGGKEPDDAEEAVDEIVSRLE #oth ......21.............2.4.4..1.......1.1...1425..35..13.32112 hla1728 ::::::DV:::::::::::::M:::E::I:::::::I::::::RT:::::::E:::E:I: HQ2527A ::::::DV:::::::::::::M:Q:E::I:::::::I::::::QTN::AA::E:::E:I: Hbo3094 ::::::DV:::::::::::::M:::E::I:::::::I::::::QTN:::T::E:::K:ID HVO_1727 ::::::DV:::::::::::::M:::K::I:::::::I::::::RT::::T::E:::E:ID hla0660 ::::::H::::::::::::::I::::::::::::::::::::TS::::AA:::V::EK:D HQ3410A :::::::::::::::::::::::N:A::::::::::::::::::::::R::::V:L:::D HVO_0158 :::::::::::::::::::::::::S:::::::::::::::::Q:T:::A:::V:I:::S Hbo1282 :::::::::::::::::::::::S:::::::::::::::::::H:S:::G:::::::::S rrnAC0681 ::::::::::::::::::::::::::::::::::::::V::::RKE:::::::T::E::S VNG2243 :::::::::::::::::::::::D:E:::::::::::::::::::K:::H:::K:T:::: Hmu3142 :::::::::::::::::::::::D::::::::::::::::::::::::K::::K:::::: Hut1951 :::::::::::::::::::::::D::::::::::::::::::::::::KK:::K:::::: NP1064A :::::::::::::::::::::::D::::::::::::::::::::::::R::::K:::::: consensus ELGLLD--- #oth 4...24111 hla1728 G::::G::: HQ2527A D::::N::: Hbo3094 N:::::::: HVO_1727 A::::G::: hla0660 G::::A::: HQ3410A ::::AG::: HVO_0158 :::::NGSF Hbo1282 D:::YGG:: rrnAC0681 D:::::::: VNG2243 ::::::::: Hmu3142 D::::E::: Hut1951 :::::E::: NP1064A ::::::G::