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[T] (AtoS) COG2202 FOG: PAS/PAC domain
4 genomes BUD1925 4 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi

VNG0160

pNG7159

-

Hbo2187

Hmu3302

- - - -

Pairwise sequence scores
Consensus score6800 VNG0160 Hbo2187 pNG7159 Hmu3302
3261VNG0160 6453 2162 2180 2286
4045Hbo2187 2162 6204 3075 3066
4955pNG7159 2180 3075 7071 4225
5109Hmu3302 2286 3066 4225 7093

987 symbols
consensus       --------------M-AAGDALAPAQVLLVGSPEWADDAAEAL--RERATIRRVETAAAA
#oth            111111111111111232333233222131123213232322211333223221222331
VNG0160         ::::::::::::::-:---------------------------::-----M:S:ID:PP:
Hbo2187         VTAEFSVAAENPVD:D:TPE:AT:P:::F::G:::::S:V:E::::SV:SVQ:::SV:DG
pNG7159         :::::::::::::::RD::SP:DT::::V:::TT:SEPFS:::TASTE::::T:::TSE:
Hmu3302         ::::::::::::::-:M:L:S::S:RI:::::S::V::::T:F::D::T:LL:AD::D::

consensus       LDRVRSRSPDALVTAASLPDEDGVALVRQLRASA-PALPVVLGTDDGSESAASDAIAAGV
#oth            232222321112121312222312322221232.1231.2.3222111123.22222112
VNG0160         GS:A::SY:A:RAA:V:M:R-------:::DF::RGCW:T:MVS::HQPVS:P-------
Hbo2187         CE:LS:GH:::V:V:R:---::::TA:ST:::D::AD::I:FC::I::::V:R:VL:::A
pNG7159         ::T::Q::V:C:::G:::D::S:IG:::::QE::::::::::::T::::AL::E::E:::
Hmu3302         :TL:AEQ:::C::::YD:::ST::::LGDV:DV:::T::::V:AA:::::::::::::::

consensus       DDYVPFDDPD----D-L--RT---L-----------RARQFDA-F-D--TATWVLDPDGS
#oth            3111122321222212122112221222222222221112.3121212211111212112
VNG0160         ----V:N:::::::-:-::--:::-:::::::::::---R:V::-:-::----:V:A::V
Hbo2187         T::::::T::::::-:-::--:::-:::::::::::----:--:-:-::-----------
pNG7159         S::::LTGT:GLRI:E:IE::GKA:QSARQAITQRE:::::::V:H:TQ:::::::::::
Hmu3302         ::::VI:EAADRPS:V:LD::RGV:EATPDRDGHER:::::E:M:A:AR:::::::::::

consensus       LLRANQTARAAADAAAAAQQGRRFWTLPW-SNDDATRADVRRLVAAAADGAFAR-----A
#oth            232212222333233132331332121112233321232222213223213123111112
VNG0160         V:S::DA:AD::TTP:::L::::L:G::::A:PT:::HE:Q:A:R:::NDEY:SFDAAFE
Hbo2187         -----------------------------:-------------------:SYV::::::-
pNG7159         :T:V:::G::ML::D:DTVI:DL::::::W:QS:::ER:I:N:::::R::Q:GN::::::
Hmu3302         :V:::::::EIG:D::S::T:GP::::::L:G:ER:::::::::ERGV:::::H::::::

consensus       VVRRPAAAG----PSRVIALSVRPVDND-G-VDRIVVEAADITERVELERDLRASEELHR
#oth            22332133111112222332212113221121212.22132221112.211..2......
VNG0160         TQ:T:::S:RDAE::VQW:FR:Q::P:::-:-::L::QGDVRR::EQ:AEE:::::::::
Hbo2187         ---------::::---------------:-:-E:T:EA::EAA:::::::E:::::::::
pNG7159         ::H:::T:-::::TN:::E::::::E::F:E:TS::I:GI::::Q:T:D::::Q::::::
Hmu3302         ::TLA:ID:::::::::FD:::::::DG::S::S:::::V:::D:::::::::R::::::

consensus       VTLNNMTDTVLMTDDDGDFTYVCPNVHFIFGYTAAEIRAQGTIDELLGEDLFDRAELARR
#oth            ...1.......2.112.31......1.1.....21...3212.12...21112231.223
VNG0160         :::::::::::V:::::T:::::::A:Y::::::E::::F::::::::C:PVGGDS:S:N
Hbo2187         :::::::::::I:::E:K:::::::::::::::E::::DL:S::A:::D:::EES::EKS
pNG7159         :::S:::::::::NEA::Y::::::::::::::DE:::Q:::::T::::N::::::::EK
Hmu3302         ::::::::::::::E::EY:::::::::::::::::::E:KP:E::::::::::E:::::

consensus       GVLKNIECTATDKAGREHTLLVNVREVSIQDGTLLYSCRDITKRKRREDALAALQETARE
#oth            ..21.1...1..11.31.............1..2......1.1..1..11.13.12.212
VNG0160         ::VT:V::::::AN:DQ:::::::::::::G::R::::::V:T::Q::::::Q::::S:D
Hbo2187         :::T:V:::::::::E::::::::::::::G::T::::::V::::Q::ES:TG:HR:TS:
pNG7159         :::::::::V:::::H::::::::::::::::::::::::::::::::E::TT:::::::
Hmu3302         ::C:::::::::::::::::::::::::::::::::::::::::::::::::::HG:::R

consensus       LLYAETAQEIAQRVVDDADAVLGVAASAVYRFDAETNRLRPVAASPAMTELHGPLPAVRL
#oth            11.11.31.1.211...2322122312.1111.222.1.2.1.32222222211113213
VNG0160         ::::G::T:A:T:::::GT:A:PAGGI::::::RHE:::Y::::ADNLAAAVEDAGEL::
Hbo2187         :Q::::V::::H:::::::EI::C:::::F:::::::::E:::HT:::DR:Y::::SF:P
pNG7159         F::T::N:::::HI:::VLS:FD:S:::I:LH:::::E:::::Q:Q::::H::::::::T
Hmu3302         F:::::H:::::::::::P:::::D:V:::L::DAA:E:::A:Y::SA::::::::T:AV

consensus       DDRTLPGHAFVADETLFFDDVHESDRLANRATDLRSVTAIPLGDHGVFVAGSD---AVGA
#oth            223212121..2122111.11122221312.12112223111.1...21.122111311.
VNG0160         :::SPV:T:::::R--VV:SGA:GEWD:GV:AG:AEW::L:I:::::VL::T:RGRSDD:
Hbo2187         SEGN:I:R:::TG:P:::::::::PA:S:P:::::::VVLS::::::L:::V::::T:::
pNG7159         NAD:::S:S::K::::V:::::T::::E:::::::::MF::::N::::::::T:::::::
Hmu3302         ::E:::::S::::D::::::::HA:::D::::EF:GT:Y:::::::::::A:P:::E:::

consensus       FDDVTREIADLLAATAEAALDRVAREAQLRERDRELQRQNERLSALNRINEIIREIDQTI
#oth            112.23.121.1.1.2......12.111..11.12..11.11.221.11.21...11221
VNG0160         LGA:GI:::R:::::L::::::LD:::E:::::QR::A::R:::EI:QV::::::V:GAL
Hbo2187         ::E:HS:::::::T:::::::::K:QS::::Q::::::R::::VS:::V::::::V::SL
pNG7159         :::::Q:LT:::::::::::::::::S:::KQ:::::::::Q:T:::Q::NT::::::::
Hmu3302         :::::::LS::F:::T::::::::::::::::::Q::::::Q::::::::DT::::GR::

consensus       VRAETREEIERAVCERLTAGDRFAFAWIGSVDPANDTLEPRAWAGDEQGYLDDQSLAVAA
#oth            12.111121221......12..13...1.1221333212...11.1221...32121231
VNG0160         :D:DS:AD::T::::::::::::::::V:DATAH::HVT:::::::ASS:::EAA:SPT:
Hbo2187         I::::::AV::::::::::E::YE:::V::I::TSQ::V:::AS:TGR:::::R:::LDP
pNG7159         :S:::K:::THT::::::DT:::K:::::::N:GGT:V:::::::T::::::S::I::::
Hmu3302         :::::::::D::::::::D::::S::::::::::HEV:::::::::::::::C::F::G:

consensus       SG-AEPAGQTAATDDVTLVSNVAADLRDAPWRAAALARDFNSVLSIPLVYNDLAHGVLTV
#oth            12131.1221..1231.122...2211221.132..311.3..111..1111132.2111
VNG0160         ::VS:::VR:::DRS::::P:::DRR:::D:P:::::HG::::::V:::SD:VLF:TV::
Hbo2187         E::-:::CS:::::EE:::::::T::QQQ:::R:::E:::Q::VAV::S:DGV:Y:::::
pNG7159         :E:TD::::::::G:::MI::::::::N::::SD::T:::L::::::::::::R::I::I
Hmu3302         :D::::S::A::::T:::ET::::G:::E:::TE::R:::T::::::::::::S::::S:

consensus       YADAKDAFDETVRAVLAELGETIASAISAAERKAALLTTSVTRVEFAVDDQSFLLSRLAA
#oth            .11312..1112.1.21...1.111.1.231..2..1122121.1111213211.2.1.3
VNG0160         :DT:PN::S::::::F::::Q:VGA:::S:Q:::::DGDTTVV:TY::R:::W::G::::
Hbo2187         :::RPA:::GM::T:M::::::V::::::V:::::::::A:::::Y::AGG::P:A:V:E
pNG7159         :::T:::::::T:T::H:::::::::L:GI:::H:::::::A::::VI::ER:::::::Q
Hmu3302         :::S:::::::A::::::::::::::L::L:::N::::P:::::::::::PT:::::::D

consensus       RADCTLSYEGGIQQTDADNALFVTVEGADVDAVVAAAADMAAIDEVRVVSADD-DSGVVR
#oth            322.12212211222321321121.11.221..212.1222312223112212122.112
VNG0160         DF::Q:TV:SEVAGSTG:TRVV:S:D:::P:::::G:TALVDVISGD::Q:TG::::::S
Hbo2187         :::::::VVT:::::VE:D:::A:::::SM:::R:::::T:G:A:Y:::AG:::AA:T:W
pNG7159         STG::IA::::::HAP:G:SV:::::D:::Q::A::::::TT::D:TQI:D::T::::L:
Hmu3302         Q:E::V::Q:::R::::GS:::L:::::P:::::DH:TE:::V:::Q:::::E:NG::::

consensus       LRLARPFLARELADHGAILREATATPEGTTLVVDVPDAVTVRAITQLLADTFSAVELRSR
#oth            13232222132..21.132.221.212212.2212.2322213122.2331123.21221
VNG0160         :S:RTGLRS:A::AQ:VTR:QL:::::SG:::AAA:::A:A::ADS::::A:AS:DVTA:
Hbo2187         F:FV::VI:SR::N::VV::R:E:::TE:L:EI:I::G:ELHS:::::SG::D::::::K
pNG7159         :E:SQ::::L::::::::F:::::D:::::::::::QS:D::N:A::VDS:::G:K:KRK
Hmu3302         :VV::-:::Q:::::::L:::V::SQG::E:R::::ERI:::E::E:IGQ:V:N::::::

consensus       RRRERPADDDRRSAVLDRLTERQLEVVQTAYYSGFFESPRANSGAEVAAMLGISPPAFYQ
#oth            1331223332332321231....1..2.1..11.1.1211231.322.32.21.12...2
VNG0160         ::QQSS:::AQGPS----:::::V::A:V::H::::DPSH:V:::V::ET::::NT:::D
Hbo2187         :H::Q:SGGEFTA:::::::::::::::::::A:Y::N:::H::D:::DV::V::A:::R
pNG7159         QTL::GIEQ::S:EF:TD::::::::I:::::::Y:::::T:::EDI:S::A::::::::
Hmu3302         :SV:::TQH:V::T:::EM:::::::::::::::::::::ETN:K:L::::D::::::::

consensus       HVRTVQRKLFTALFEERGCSASEA---
#oth            .112112.1.211.1232313223222
VNG0160         ::NRIES:V:D:V:DDP:::WV:-:::
Hbo2187         :I::::::::AV::::TEY:::I:RDY
pNG7159         :::::::::::::::::SV:GR:S:::
Hmu3302         :::A::Q:::::V::AY:LLE:GRFNS