|
Pairwise sequence scores | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1303 | Hut1942 | HVO_0917 | pNG6041 | VNG2413 | hla2300 | rrnAC0784 | Hmu0284 | Hmu1399 | hla2376 | pNG6051 | hla0436 | NP6076A | Hbo1255 | HVO_1757 | HVO_0763 | HVO_A0548 |
460 | Hut1942 | 1596 | 628 | 245 | 297 | 394 | 302 | 323 | 322 | 281 | 366 | 384 | 349 | 314 | 364 | 355 | 382 |
477 | HVO_0917 | 628 | 1362 | 274 | 306 | 285 | 263 | 240 | 242 | 330 | 407 | 427 | 344 | 397 | 411 | 470 | 488 |
601 | pNG6041 | 245 | 274 | 1352 | 416 | 414 | 413 | 392 | 390 | 371 | 365 | 427 | 557 | 448 | 463 | 445 | 464 |
704 | VNG2413 | 297 | 306 | 416 | 1322 | 712 | 666 | 721 | 715 | 326 | 368 | 399 | 547 | 510 | 450 | 448 | 463 |
809 | hla2300 | 394 | 285 | 414 | 712 | 1348 | 932 | 1032 | 1030 | 377 | 425 | 383 | 582 | 482 | 503 | 479 | 501 |
762 | rrnAC0784 | 302 | 263 | 413 | 666 | 932 | 1544 | 1018 | 1023 | 279 | 375 | 356 | 559 | 462 | 547 | 477 | 508 |
827 | Hmu0284 | 323 | 240 | 392 | 721 | 1032 | 1018 | 1335 | 1329 | 348 | 369 | 379 | 583 | 470 | 517 | 453 | 493 |
825 | Hmu1399 | 322 | 242 | 390 | 715 | 1030 | 1023 | 1329 | 1334 | 346 | 367 | 377 | 588 | 475 | 519 | 455 | 495 |
567 | hla2376 | 281 | 330 | 371 | 326 | 377 | 279 | 348 | 346 | 1341 | 634 | 640 | 365 | 483 | 446 | 449 | 437 |
619 | pNG6051 | 366 | 407 | 365 | 368 | 425 | 375 | 369 | 367 | 634 | 1413 | 926 | 482 | 619 | 540 | 605 | 609 |
607 | hla0436 | 384 | 427 | 427 | 399 | 383 | 356 | 379 | 377 | 640 | 926 | 1385 | 461 | 523 | 486 | 510 | 519 |
749 | NP6076A | 349 | 344 | 557 | 547 | 582 | 559 | 583 | 588 | 365 | 482 | 461 | 1405 | 602 | 641 | 581 | 604 |
809 | Hbo1255 | 314 | 397 | 448 | 510 | 482 | 462 | 470 | 475 | 483 | 619 | 523 | 602 | 1383 | 748 | 858 | 856 |
854 | HVO_1757 | 364 | 411 | 463 | 450 | 503 | 547 | 517 | 519 | 446 | 540 | 486 | 641 | 748 | 1343 | 864 | 957 |
841 | HVO_0763 | 355 | 470 | 445 | 448 | 479 | 477 | 453 | 455 | 449 | 605 | 510 | 581 | 858 | 864 | 1237 | 1213 |
878 | HVO_A0548 | 382 | 488 | 464 | 463 | 501 | 508 | 493 | 495 | 437 | 609 | 519 | 604 | 856 | 957 | 1213 | 1328 |
236 symbols consensus --------------------MATNTTN------PLGGDVEFDLSGTWTGYWLALLRLITG #oth 1111111111122221222234587973345669556767466636273232343.243. Hut1942 :::::::::::MELAVYVPFE:LRM:TRELDAELF:RA:S:RY:E::I::S:LS::::M: HVO_0917 ::::::::::::::::::::-------::::::-----:R::Y:ER:V::S:F:::VVM: pNG6041 :::::::::::::::::::::S:QSIR::::TNF::TETS:SV::A:LS::IL::::TA: VNG2413 :::::::::::::::::::::GY::RA::::::GTESGAGYGAA:::PA::I:VV:VL:: hla2300 :::::::::::::::::::::SYQSS:::::::::V:E:::A:D:P:AA::I:F::VV:: rrnAC0784 MGFHSVGTPSPLYATVVRNSICEV:QMSYQAAN::AD:F:LK:G:A::A::::F::VV:: Hmu0284 :::::::::::::::::::::::::A:::::::::AT:F:LE:D:PL:S:::::::V::: Hmu1399 :::::::::::::::::::::::::A:::::::::AT:F:LE:D:PL:S:::::::V::: hla2376 :::::::::::::::::::::S:K:::::EFGGEI::VTILGKAHSLSALFIV:::ATI: pNG6051 :::::::::::::::::::::S:LDSGMNQLESRV::LTVGGKVHSLSAWFVLA:::MM: hla0436 :::::::::::::::::::::S:QEVA:::LRSTI::VSVEGRLH:LSVWFILA:::MI: NP6076A :::::::::::::::::::::::QNKR::TTTKLF:RG:SYGT::Q:NS:::LF:::VM: Hbo1255 :::::::::::::::::::::S:P::T::TTDTKFDDVLN:::Q::LA::::VAV::::: HVO_1757 ::::::::::::::::::::::ATGEI:::::EM::NRM:::YAEGV:::V:VFA::V:: HVO_0763 ::::::::::::::::::::-------::::::-----MD::Y:RGV:::V:V:T::::: HVO_A0548 ::::::::::::::::::::::A:SQI:::::EM::NRMD::Y:RGV:::V:V:T::::: consensus WWFFHAGLTKIV-------GEPFSAAGYLMN--GMAG--TPLAGIFAW--------MGAN #oth 333242.44.46111123557624353337744535422342624845111111114275 Hut1942 :T::Y::I::VL:::::::NPEW:VR:F:TYSI:PENPLSN:::YNI:DIMATGEIL:TG HVO_0917 :TL:QG:I::L:TYLDSDPSNNWT:::::A::AIPE:::N::M:LWSS:::::::::AGS pNG6041 ::ML::::D::W:::::::AW::D:SWFVGG::AAQ::::I::PFVTP::::::::FSDG VNG2413 :::::::F::LL:::::EG:LT:DPS:::Q-:::::::::V::PVGTT::::::::LAGY hla2300 :::::S:I:::I:::::ES:FSY:YGAMY:Q::::SD:::A:G::PV:::::::::::N: rrnAC0784 :::::::V::LI:::::ED:LAY:YGPMYLK::Q:T::::A:GP:PVL::::::::::EH Hmu0284 :::::::V::L::::::ED:LAY:YGPMY:Q::E:T::::A:GP:PV:::::::::::N: Hmu1399 :::::::V::L::::::ED:LAY:YGPMY:Q::E:T::::A:GP:PV:::::::::::N: hla2376 GMILF:::G:VS:::::::EW::D:::::VHGVDA:-::S:VS:LY:A:::::::::AS: pNG6051 YA:AYS:F:::T:::::::-GE:A:G:::S:VAATN:::N::::L:::::::::::::ST hla0436 LA::QS::D:VL:::::::SGE:::V:::Q:APAAN:::S:A::L::A::::::::::ES NP6076A ::::SS::S::::::::EY:VLYD:H:WM:F:::TE::::IVYP:T::::::::::FA:: Hbo1255 Y::L:::WN:FA::::FVS::S:D:::::L::::TTA::S::H:F:::::::::::AA:T HVO_1757 Y::L:::V::YL::::::GA:::N:::W:V::::T::APG:VHAFL::::::::::V:QT HVO_0763 Y::L::::G::T:::::::::::::::::A:::AP:A::S::Q:F:::::::::::AA:T HVO_A0548 Y::L:::V:::::::::::::::::::::A:::AP:A::S::Q:F:::::::::::AA:T consensus PALL--INVMVPLGETLIGLGLIVGALVRLAAFGGAVLMTFFY--------L--GNA-EW #oth 364542565423522322.11132.421.21143.243.421111111111311134236 Hut1942 LYWYQLLTPLNQ::L::V::A::A::F::FS::W::LM:::YW:::::::::::AAF:PL HVO_0917 :L--::TDMLNMW:L::A::A::L::F::FS::W:::M:L:YWAAALEGGI:::AGL:PL pNG6041 -I::AFV::A::::Q:A::::::L:V:T:T:::F::FM:L:::::::::::FIN:YGGG: VNG2413 :GI-:::GP::VIF::::::A::::L:T:F:S:::VMF::M:W::::::::I:::::::Y hla2300 L:W::::EPG:::F::::::A::A::FT:::::::VIF::L:W::::::::V::::::GF rrnAC0784 LGW::::QA:::::::::::::M::::::::SVF:VFF:SL:W::::::::I::::::GF Hmu0284 L:W::::APG:::F::::::A:MA:L:T:::SI::VIF::L:W::::::::I:::::::F Hmu1399 L:W::::APG:::F::::::A:MA:L:T:::SI::VIF::L:W::::::::I:::::::F hla2376 A::MEFV::F::ATQL:::TA:::::F:::::L:::IQ::L::::::::::::::GWSGD pNG6051 :WFVEFA::A::Y::LF:::::L:::F::::::F::LM:LM::::::::::F::::W:DM hla0436 ALFIDFV::A::W::V:::::V:::L:T:::::W::FM:LM:::::::::::::::W:DI NP6076A AVW:::P:LLI:W:QL:::::::::C:T::::AN:::::F:::::::::::F:::::::: Hbo1255 :W:MEFT:F:I:T::F:::::::::G:::::S:F:::::V::::::::::::::::::D: HVO_1757 :V::EFT:L:::::::::::::V:::A:::::A:::F::::::::::::::::::::::: HVO_0763 :W::DLT:::I:W::F:::::::::::::::::F:G:::V:::::::::::::::::::: HVO_A0548 :W::DLT:::::W::F:::::::::::::::::F:G:::V:::::::::::::::::::: consensus GHG-LVNGDLMGLLLFLTVIALGAGRILGLDAIIEKTE-----LVERRPKLRYLLG #oth 332242233241432155332111.12212.322155422133334573334331. Hut1942 EGSV:IDFHFVYV::LFGIG:F:T:::::::::::EHPVT:KPYLD:Y:W:NLF:: HVO_0917 A::WV:DDHIVYAV:LFGLG:F:::::::V::YL:NM::::::F:R:NRWMSLVM: pNG6041 AN::M:T:E:L:IMV:G:IV:::::GV:AV:NRLREM:::::::F:N-TR::K::: VNG2413 A:::V::S:F::::::T:I:VF::::YY:::S:V:R:D:::::::QGA:R:K:::: hla2300 :::::::S:F::::::V:M:V:A:::YY::::::::LD:::::V::QH:::::::: rrnAC0784 :::::::S:F::::::M:M:V:AT::YY:::::::::K:::::::K:H:::::::: Hmu0284 :::::::S::::::::::::V:::::YY:::::V:Q:K:::::::Q:H:::::I:: Hmu1399 :::::::S::::::::::::V:::::YY:::::V:Q:K:::::::K:H:::::I:: hla2376 ALA::FDST:VYAIV::::A:F::::V:::::Y::RF:VGGQA:::EF:A:::I:: pNG6051 ::::FI:::FAYM:V::A:A:FA::::::::QY::NYDVGGET::::Y:A:E:I:: hla0436 S:::YI:::FAYM:V::S:A:F::::::::::YV:QY:IGGQP::::Y:WT::::: NP6076A :N::F:::::F:::::::I:VFA:::VW:I::YL:G:N:::::Y:KN::::::I:: Hbo1255 A::::::::::::V::V::ATF::::::::::YL::FD:::::FAKTKAA-KFI:: HVO_1757 ::::::::::L::VM::V:G::AT::::::::YL:E:::::::F:RQ::::::::: HVO_0763 ::::V:::::F::MM:VI:GT:A:::::::::::::M::::::F:RQ::A:K:::: HVO_A0548 ::::V:::::F::MM:VI:GT:A:::::::::::::M::::::F:RQ::A:K::::