| ||||||||||||||||||||||||||||||||||||||||
| Pairwise sequence scores | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Consensus score | 1960 | rrnAC1150 | Hmu3310 | VNG2199 | hla1545 | NP3138A | hla2720 | NP2970A | HVO_0941 | Hbo2892 |
| 1074 | rrnAC1150 | 1921 | 919 | 851 | 871 | 929 | 864 | 925 | 866 | 781 |
| 1182 | Hmu3310 | 919 | 1933 | 805 | 921 | 907 | 877 | 954 | 975 | 979 |
| 1083 | VNG2199 | 851 | 805 | 1720 | 846 | 882 | 794 | 794 | 778 | 756 |
| 1317 | hla1545 | 871 | 921 | 846 | 2246 | 1163 | 968 | 1036 | 978 | 931 |
| 1346 | NP3138A | 929 | 907 | 882 | 1163 | 2033 | 950 | 1068 | 1000 | 938 |
| 1192 | hla2720 | 864 | 877 | 794 | 968 | 950 | 2085 | 1088 | 936 | 912 |
| 1332 | NP2970A | 925 | 954 | 794 | 1036 | 1068 | 1088 | 2083 | 1107 | 1106 |
| 1322 | HVO_0941 | 866 | 975 | 778 | 978 | 1000 | 936 | 1107 | 1965 | 1160 |
| 1292 | Hbo2892 | 781 | 979 | 756 | 931 | 938 | 912 | 1106 | 1160 | 1957 |
310 symbols consensus ---------------------MDPDISTLLPTETVELGVFLLVGLLGGAHCLGMCGPLVT #oth 11111111222222313343577755347433444434314331232221121......1 rrnAC1150 ::::::::::::::::::::::QFGTAG:SSG::AG:AA:VGL::V:SV::::::::::: Hmu3310 ::::::::::::::::::::MSV:QV:GA:SGQ-:::V::A:::::::V::::::::::: VNG2199 :::::::::::::::::::::--------------------------------::::::: hla1545 MRELGAGVDSLARQTLVPATATCEPTG:IHSA:PLS:::::::::::::::::::::::S NP3138A ::::::::::::::MLSVQTCN::SV:AVPG:::LS::::A:::::A::::::::::::: hla2720 :::::::::::::::::::MIRLM::::::G:---DVLL:FVI::::::::I:::::::: NP2970A ::::::::MQAVALPLASVLAQAH:H::T::::H:D:L:::VI:::A::::::::::::: HVO_0941 :::::::::::::::::::::::GG::LG::AA:P:AVA::::::F:::::::::::::S Hbo2892 ::::::::::::::::::MTPLSSQA:AS:::TG::A::::V::V::::::::::::::S consensus VYADRLRD----------------DRRGGP--LTLRQVRQHALFNLGRAASYAAIGGLFG #oth 3.111346222222212222233444445511314232...2...3..131.232.3331 rrnAC1150 T:::::D:::::::::::::::::---:::::VSSHEI:::::::A::TL:::LV:TVL: Hmu3310 ::::QMGT::::::::::::::::---D::::A:W:TI:::L::::::T:::TVL:V::: VNG2199 M::::IGT:::::::::::::::::D:R::::-ST:AL:::::::G::TV::::V:::M: hla1545 T::::M:SDAAADGNGGNGGPERTA:A::SDD::V:::::::::::::T::::::::::: NP3138A ::S:::GN:::::::::::::::::G:RDV:::::::::::::::::::V::GL:::IA: hla2720 :::G:M:EGSERADGGAPTAGATDT:::SH::::TYE::::::::::::::::T::AAL: NP2970A A::::FNP:::::::::::::QAGT::ANA:::::YE::::::::::::G:::L:::::: HVO_0941 ::::::A:::::::::::::::REGVDSRS:::::::::::::::V:::L::::::AV:A Hbo2892 :::::::A:::::::::::::::T:DTDAE::::V::::::T::::::::G::VV:AILA consensus AAGALLFDAAD-VTAVATAVRATTGLVVGAAIIAIGVGYLRGGAAGLVRLPVPGLGAAFG #oth 23.224334434133315511143.232.421334.35.344244656454435357525 rrnAC1150 :::SV:Y:V:G:LARLG::::GAV:VF::L:::TV:L:::SR:R:VD:ARSL:LV:DL:Q Hmu3310 GL::::Y:::A::A:::ND:::VA:::I:GV:LLV:AN::LT:TG::FGHAPT--P:V:E VNG2199 :V:GV:V::GG::L:::HL::GVA:V:A::::V:A::::AA::GSR:AAGA:::::R::S hla1545 L::S:A:VTGRT::T::DD:H:L:::::::VV:::::R:AL--RLE:Q:I::::IE::S: NP3138A L::S:V:VE:GHL:TA::EIH::M:::::L::VG::IA:I:H:G:::PH:TI:L::GQ:S hla2720 :L:GAVLVTTAT::GA:E:::GVV:IG::::V:L::IR:VL:::T:GIH::------GLD NP2970A LI:::A:AST:A::::GDS::GGV::L::I::V:S:LY::::QSG--:PHG::VI:TF:: HVO_0941 LV:G:F:::F:S:::IGSG:::::::L::G:::LT:::::V:QS:AID:FTPTAVTSL:: Hbo2892 :I::VTVG:L:A:V:IG:G::::::VL::VL:M:T::S::::::GSV::::-GR:SN::R consensus RVSGRLTARVDRWVGGPRIVGLGAAHGLLPCPIIYPAYLYAFATGSPVRGAAALAALGLG #oth 312463251112115322122..15.131...12..111..123121341132.32..11 rrnAC1150 :L:AS:V:::::::D::GM:A:::M:::::::LL:::F::::::::AFT:GLS::::::: Hmu3310 :::TA:LD:IE:::R::Q::A::::::V::::LL:::F::::::::::::GV:::V:::A VNG2199 A:T::::DH::D:AT::::AV::::::A::::L:::G:V::V::A:::E:::::G::::: hla1545 V:T::IVP:I:A:::NW:::::::::::::::LL:::F::::VQ::ALG::::::::::: NP3138A :LQQGMV:::::::A::::A::::V:::F:::::::::::::VQA::AG:::::VV:::: hla2720 ::T:W::GH:::LAN::G::::::V::::::::L:::::::::S::A:S::L::::::V: NP2970A W:::L::S:I::LANS:G:L::::L::::::::::::::::::L:D:::::LS::V:::: HVO_0941 ::::WA::::::L::::::L::::I:::::::::::::::::S::E:L:A::L:GL:::: Hbo2892 :::SV::N:::AL::DT::::::VG:AF:::::T::::::::::AD:::A:FL:SL:::: consensus TIPTLFLYGTALGSLSARTRRRLHRALGVAFVVLGYIPLAHGLMA-LGIHLPHPPIPFYQ #oth .3.31.21.12334213541531..2..22.2211221222.11214.232.2332.424 rrnAC1150 :F:LV:A::::F:T::PGH:AT::::::IV:IA:ALV::SN::A::F::AI:K::L:M-- Hmu3310 :V::V:A::V:FQ:I:P:FQGP:::V:::T:LL:::L:::::A:L::::::::SS::I:: VNG2199 :F::::A::::VDAV::T::::V::::::::::A:T::::K::A::::WPV:QV:L:M-P hla1545 :V:A:::F::VF::V:VD::M:::::::::::A::::::Q:::AT:::VP:::::::Y:S NP3138A :V:S::::::L::G:::T::Q::::L:::::::::::::Q:::A::M:VP:::::::Y:S hla2720 :M:AV:::::VIE:VD:VH:::V::L::::::A:::VLF:::::::I:V:V:::SL::WN NP2970A ::::::V:::::::::TSS:V::::L:::::I::::::IQ::::LAF::::::::::::: HVO_0941 ::::::::::L::RV:::R:AT::::::A::L:::::::S::::L:::VSV::LHV:::: Hbo2892 ::::::V::::::::::GR::S:::V::AV:L::::L:::::::L:V:::::::M::V:: consensus PL-------- #oth .342111111 rrnAC1150 :WT::::::: Hmu3310 ::G::::::: VNG2199 ::PT:::::: hla1545 :::::::::: NP3138A :F:::::::: hla2720 :IDIAGAGGR NP2970A :::::::::: HVO_0941 :::::::::: Hbo2892 ::G:::::::