|
Pairwise sequence scores | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1455 | HQ1006A | VNG2371 | hla0588 | NP0732A | Hbo1495 | HVO_0011 | Hut1733 | rrnAC2659 | Hmu2957 |
961 | HQ1006A | 1457 | 870 | 772 | 870 | 962 | 888 | 814 | 848 | 868 |
1012 | VNG2371 | 870 | 1463 | 874 | 889 | 927 | 982 | 910 | 890 | 901 |
1042 | hla0588 | 772 | 874 | 1532 | 1004 | 928 | 989 | 989 | 969 | 984 |
1074 | NP0732A | 870 | 889 | 1004 | 1460 | 1046 | 1076 | 986 | 981 | 992 |
1150 | Hbo1495 | 962 | 927 | 928 | 1046 | 1483 | 1062 | 937 | 988 | 1001 |
1217 | HVO_0011 | 888 | 982 | 989 | 1076 | 1062 | 1451 | 1010 | 1020 | 1060 |
1165 | Hut1733 | 814 | 910 | 989 | 986 | 937 | 1010 | 1931 | 1175 | 1147 |
1184 | rrnAC2659 | 848 | 890 | 969 | 981 | 988 | 1020 | 1175 | 1525 | 1224 |
1206 | Hmu2957 | 868 | 901 | 984 | 992 | 1001 | 1060 | 1147 | 1224 | 1514 |
278 symbols consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 HQ1006A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG2371 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0588 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP0732A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo1495 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_0011 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1733 VTSATTSSRRSAAASVPPISLSRPVVIATGEELRADNATESDAVDRGTDTYFPVCVSGGN rrnAC2659 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2957 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus MYVGRFVVVGPDVGAYRVSSRSFPNRRAVDRDGTLTVGPTPDAPETDNPYISYNCVR-E- #oth ..2...111215411.......1...2333.1342..3..31.21.2...11..23.241 HQ1006A ::L:::III:ETTAV:::::::Y:::QIIS::NM:::V::SE:AQ:N:::V::::M::Q: VNG2371 ::I::::::::S:A::::::::::::KLIE:PAG:::V::A::E::T:::V:::::::T: hla0588 :::::::::A:GI::::::::::::::VT::::R::::::::::::::::V::::A:AVR NP0732A ::::::I::A::RA:::::::::::::I::::::::::::E::::::::::::::L:TV: Hbo1495 ::::::I:I:::F:::::::::::::QV:E:::::::A:::::::::::::::::::::: HVO_0011 :::::::::S:GI::::::::::::::V::::DA:::::::::::::::::A:::::::: Hut1733 :::::::::A:E::::::::::::::K:::::::I::A::A:::::::::::::A:::L: rrnAC2659 :::::::::S:E::::::::::::::Q::Q::::V::E::::::::::::::::G:::V: Hmu2957 :::::::::::Q::::::::::::::::L:::::I:::::E:::::::::::::A::::: consensus ---GGRGAVVGNGSHVDPIAEKLDLGYPARDALAEPLLALDYEKDDYDTPRIAGVVGVD- #oth 11132452.1...11...11..231.1.1...2113.111.1.....1...1..111525 HQ1006A :::::EKI:I::::::::::::I:R::::::::::A:::::::::::N::::::I::SS: VNG2371 :::A:GH::::::::::::T::VER:::P::::T:A:::M:::::::::::::::LAP:G hla0588 TPTDEPL::::::::::::::::E::::::::::T::::::F:::::::::::::::AET NP0732A ::::DDY::::::TQ::::::::S::::P::::::S:::::::::::::::::::::DE: Hbo1495 :::::DSV:::::::::::::::::::::::::::S:::M:::::::::::::::::EE: HVO_0011 :::::DYV::::::Q:::V:::::::::P::::::I:::::::::::::::::::::D:E Hut1733 :::TD::::I:::::::::::::A::T::::::::::K:::F::::::::::::I:::SE rrnAC2659 :::TE::::::::::::::::::E::::::::I:::::S::F:::::::::V::I::::A Hmu2957 :::TD::V:::::::::::::::S::::::::V::S:::::F::::::::::::I::::P consensus -----------AYIGIVRRDALLVEAVTE-PTLVATYEEDDPEAFDLDAA-----DAAEA #oth 31111213231231.21.3.11211313.1.11.1...423.435514251111222233 HQ1006A :::::::::::S:V::I:Q::VIIRSIS::::::S:::N:A:TTAQ:SLK::::G:IE:I VNG2371 T::::::::::::V::::A::V::R::E::::::::::K:A:::IGF::::::::T::D: hla0588 ::::::::::::T::V::::G:V::::D::::I:::::T:S::PYA:A::DAETP:::A: NP0732A :::::::::::S:::T::::::I::::E::::::::::KSE::PTS:G:D::::::PS:L Hbo1495 :::::::::::S::::::::::::RP:::N:M::::::::::AVVVF:GD::::GSP::L HVO_0011 ::::::::::::::::::K:::V:::::::::::::::::::R::::::E:::::T::D: Hut1733 DDPT::AGEAG:A:::::::::V::::E::::::::::R:::VP:::G:N::::::::G: rrnAC2659 ADPTTNADGPG:V::T:::::::::E:::::::::::::NS:T::::A:T:::::::SDV Hmu2957 DDPTTRAEGHGGV::T:::::::::E::::::::::::T:S::::::E:T:::::::E:I consensus AREAYDHEFEHAVCAAGVT--GDG--GDVETAIYNGE- #oth .42213422..1..1.113224321114433332.241 HQ1006A :QK::EL:Y::P::::A::HQ:Q:ES::IVAQ::::K: VNG2371 :::::SAA::::::::::SRR:V:::DGYD::VV:DP: hla0588 :T:VLGAD:::P:::::A:::V:A::DGATL:FD:DAE NP0732A :A:L::RDL::P::::::V::A::::DSF:VGY::::: Hbo1495 :ER::EMDY::::::::::::Y:D:::::DVGF::D:: HVO_0011 :::L::::::::::::AA:::-V:::DA:::SF::::: Hut1733 :::L::::::::::::::S:::SA::::Y::::V:E-: rrnAC2659 :::V::::Y:::::S:::A:::SA:::EFDV:V::::: Hmu2957 :::V:G:::::::::::::::-VD:::G::::::::-: