|
Pairwise sequence scores | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Consensus score | 1603 | HQ1863A | Hut0702 | Hbo3768 | HVO_B0159 | rrnAC1193 | hla0221 | VNG1488 | HVO_0492 | Hbo2878 | Hut0367 | NP1538A | HVO_1117 | NP1564A | rrnAC3490 | Hmu2184 |
780 | HQ1863A | 1651 | 484 | 468 | 527 | 472 | 510 | 556 | 532 | 522 | 632 | 592 | 621 | 557 | 608 | 632 |
751 | Hut0702 | 484 | 1738 | 489 | 624 | 542 | 405 | 486 | 502 | 482 | 494 | 599 | 579 | 642 | 596 | 499 |
755 | Hbo3768 | 468 | 489 | 1603 | 802 | 574 | 506 | 419 | 549 | 559 | 596 | 554 | 650 | 682 | 566 | 551 |
782 | HVO_B0159 | 527 | 624 | 802 | 1533 | 660 | 477 | 470 | 631 | 599 | 629 | 564 | 592 | 635 | 592 | 567 |
774 | rrnAC1193 | 472 | 542 | 574 | 660 | 1649 | 467 | 471 | 511 | 475 | 592 | 568 | 586 | 664 | 553 | 560 |
755 | hla0221 | 510 | 405 | 506 | 477 | 467 | 2346 | 524 | 531 | 524 | 516 | 464 | 647 | 672 | 495 | 528 |
839 | VNG1488 | 556 | 486 | 419 | 470 | 471 | 524 | 1644 | 872 | 804 | 508 | 584 | 598 | 613 | 513 | 529 |
968 | HVO_0492 | 532 | 502 | 549 | 631 | 511 | 531 | 872 | 1636 | 1034 | 582 | 623 | 657 | 727 | 610 | 620 |
956 | Hbo2878 | 522 | 482 | 559 | 599 | 475 | 524 | 804 | 1034 | 1622 | 609 | 607 | 667 | 682 | 625 | 603 |
837 | Hut0367 | 632 | 494 | 596 | 629 | 592 | 516 | 508 | 582 | 609 | 1559 | 649 | 741 | 659 | 692 | 662 |
884 | NP1538A | 592 | 599 | 554 | 564 | 568 | 464 | 584 | 623 | 607 | 649 | 1590 | 765 | 686 | 692 | 671 |
992 | HVO_1117 | 621 | 579 | 650 | 592 | 586 | 647 | 598 | 657 | 667 | 741 | 765 | 1600 | 860 | 757 | 686 |
1057 | NP1564A | 557 | 642 | 682 | 635 | 664 | 672 | 613 | 727 | 682 | 659 | 686 | 860 | 1625 | 772 | 647 |
894 | rrnAC3490 | 608 | 596 | 566 | 592 | 553 | 495 | 513 | 610 | 625 | 692 | 692 | 757 | 772 | 1597 | 801 |
876 | Hmu2184 | 632 | 499 | 551 | 567 | 560 | 528 | 529 | 620 | 603 | 662 | 671 | 686 | 647 | 801 | 1554 |
347 symbols consensus ------------------------------------------------------------ #oth 111111111111111111111111111111111111111111111111111111111111 HQ1863A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0702 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo3768 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_B0159 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC1193 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla0221 MSHASANSLVVIAVSAAPRIARQSGSASASNVSSSVSSPSVAVVGPVACGTFRFMDVGSG VNG1488 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_0492 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hbo2878 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut0367 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP1538A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_1117 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP1564A :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC3490 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2184 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: consensus ----------------------------------------------MPAGIRAEVEVDGP #oth 111111111111111111111111111111111111111111112336823333263872 HQ1863A ::::::::::::::::::::::::::::::::::::::::::::::::D:::T:LA:HN: Hut0702 ::::::::::::::::::::::::::::::::::::::::::::::-ME::::KLVIEE: Hbo3768 :::::::::::::::::::::::::::::::::::::::::::::MTGQ:VH:::::VTG HVO_B0159 ::::::::::::::::::::::::::::::::::::::::::::::----VHG:IH:AD: rrnAC1193 :::::::::::::::::::::::::::::::::::::::::::::::SGR:L:::::F:: hla0221 SVHPNTGPAYVGCFIRNRRSVAPVCERRRRADGVNVLSDGGHERTQ:GS::::::SLPTA VNG1488 ::::::::::::::::::::::::::::::::::::::::::::::::::::VT:SFPR: HVO_0492 :::::::::::::::::::::::::::::::::::::::::::::::::::::T::F:S: Hbo2878 ::::::::::::::::::::::::::::::::::::::::::::::::P::::T:AFTT: Hut0367 ::::::::::::::::::::::::::::::::::::::::::::::----M:::I::LS: NP1538A ::::::::::::::::::::::::::::::::::::::::::::::--M:LE:A:KIPN: HVO_1117 ::::::::::::::::::::::::::::::::::::::::::::MTSA::::::LK:T:: NP1564A :::::::::::::::::::::::::::::::::::::::::::::::S:::::::R:::G rrnAC3490 :::::::::::::::::::::::::::::::::::::::::::::MSDS:::V:LS::A: Hmu2184 :::::::::::::::::::::::::::::::::::::::::::::::SE:L:V:LAI:S: consensus EACPVADVSDEADTPVTSVSRSVVGAD-GTVVEEFTA--DADAAPD------EDLEPVFD #oth 7813258536864764632323774667274451.7423763565611123477536218 HQ1863A TN:::STI:ATQEGS::DINWTGQ::N:E::T:::RVSQ:ISS:VE:::SDF:CA:::V: Hut0702 PQ:D::A::RDCG-::A:::::A:PDED:R:HD:::V::REGDC::::::TLG:ATAI:Q Hbo3768 AG:RIGNMPQKTE-EIS:I:::TMPSE:DS:TVD:::::ESGTEFN::::::-ST:E::H HVO_B0159 SI:R:SEA:K--E:A:E:::::-:::TGD:AAV::::::PSS::I:::::::-:ADEI:H rrnAC1193 RS:H:QPHA::-EWS:S::::::TS:AADP:I::::L:KGG:GP:SVLQTDGLNVDH::A hla0221 SPS:FDG:V:-GS::IY::A::SSNG:PE:::L::I::::::LPVS:::::::GV:V::: VNG1488 PV::I:VL:ER:N:TI:N::T:IAAD-::AP:T::LI::::::V::::::D:Y:RD:::T HVO_0492 SV::::S:AHST:SV:D:::T:::STPGEVS:S::VL::E::DP::::::A:SA:::I:S Hbo2878 DL::IVEL::A:EIT:D::ATN:PAS:C:EC:T::S:::::::DSE::::::T::T:I:S Hut0367 ::::::GL:EQ::D:L:::::--A:NAE:::T::::V::SG::TLT::::D:DR:SQL:E NP1538A :Q:::::::A:::AR:GD::W:G:PN:D:S:::::EL:::T::D:P::::::D:M:K::G HVO_1117 DG::::T::E-G::SGYAL:::MAPNER:S:::::VF:::D::EVP:::::::EM:EL:E NP1564A GS::::VA:AD:G::TY::A:::T:S:PDR:T:::ML::A:EGT::::::AGT:::A::: rrnAC3490 G:::::S:::::G:A::D:A::-SPDAD:Q:I:::::TGTD:G:IE::::AR::M:K::V Hmu2184 :::::::A:ERV:GS::N:T::TG:--:EA:::::S:::P:GTDVG:::::::AV::L:E consensus YGDKTVYRFSRDRGAG--CPCECVEAFGCPVADIRARDGSLVLTFHAADVETLRAIVAEL #oth 556655213736866622141462286243164563562816333345365831422781 HQ1863A V::ER::::K:NHEEA:::A::I::SS:A::::V:::S:V:H::L:LES:DK::T::DK: Hut0702 DDRR:I::LA:S::Q::::A:::I:RE::T:R:VQVV::T:FV:VL:::LDGI::::ST: Hbo3768 :D::::H::ECKT:TTPS::::F::SR::::RSF:TTENA::VQ:V:R:IRN::E::VG: HVO_B0159 HEQ::I::VTHSFTEESR:A::LI:GH::::RHLE:DC:AV::S:V:::L:SF:D::VN: rrnAC1193 :EQRH:FQL::AA:Q::::V::RI::A::V:HEFT:DTE:::V::LVD::P:::E:::D: hla0221 ::A:AA:::KVP:VEA::S:FAILDRHSV::SETTI:::R::V::::T:LP:::SVLD:F VNG1488 :T:RHL::VRH:AE:A:::::V:LG:HDT::NRY:::::E:QIV::GREFD:VQ:::G:: HVO_0492 ::S:HL::YTH:GS:D:::::::LGE:::::DRYF:QR:::T:V:::::Y:Q:Q:VIG:: Hbo2878 H:PTNR:::TH:D:VN:::::::LGQ::::::RYV:Q::H:T:V:::::Y:E::SV:::: Hut0367 :RSAS::::HHES-LD:::V::F::DHDH:ISE:::Q::::::SL:LTTIQD::DL:TD: NP1538A DNRYSI:::D:AGD:P:::I:QRI:T:::::::VE:V::::RIV:RP::::S:QE::GT: HVO_1117 :::GS::::D:EG:I:::::::R::::D:::V:VQT:::A:F:::::P::::::DV::A: NP1564A ::S::M:::::E::V:::::::VI:VED:::V::HT:::N:H:V:::::M:::QEVIFS: rrnAC3490 T:NG:R:Q:::S:-TE:::V::A::TYD::::::::EG:Q:R:::::P::DRV::::TR: Hmu2184 N:SEAR:::R::PDQD:::F:DA::T:D:A:S::Q:E::QVIA:A:VD:AAQV::V:E:: consensus RERFGDVDLRRLVRSPE--GTEEDDLVL-VDRGKLTDRQREVLETAYEMGYFEHPRGANA #oth 3456543625424356611655776634132135..4..3...32.231...42.24.11 HQ1863A DDAAER:E::Y::HADASG:SD:P:RA::::::A:::::Q:::Q:::S::::QY::D::: Hut0702 ::SRDG:QVGT:::A:P::ES:SGP:WV:T:P:E::A::::::::::::::::Y::N:T: Hbo3768 ::Q:P::S::::T::Q:::PEANNN::::IN:DT::E::Q::::::H:::::G::KD::: HVO_B0159 KSA:DG:S::::TQ:EP::DSATGS::F::::DE::A:::::::::H:::::::::E::: rrnAC1193 QSEGEA:K::::LEDTP::-::A:RP:V:L::A:::S::::::AR:H:::::::::D:T: hla0221 ::SCS:MQVL::LQ:SS::TP::S:::T::::SE::E::::::TA::DA:::D::K:::: VNG1488 :AE:A:I:IQ::::A:T::::AAQ:TAF:::::Q:::::L:::T::::A::::R::::T: HVO_0492 :D::PGL:IK::::::T:::DAPG:S:F::::::::T::L:::Q:::D:::::R:::::: Hbo2878 :D::P:::IK:F::::A::VEQSQ:S:F::::S:::T::L:::Q:::D:::::R::R::: Hut0367 :::Y:A:RI:Y:LQVES::DE:GSTD:IPI::SR:::::K:::::::R::::SY::D::: NP1538A QRE::GIQ:EH::Q:S:::P::GE-T:V:::::R:::::::::::::::::::::K:::: HVO_1117 ::SS:S::V:::LQ:ST::-D:SR::::::E::Q::::::::::::H:::::D:::R::K NP1564A ::::PS::VQ::L:DQH::EAP::N:I::L::SR::::::::::::H::::::::M:::: rrnAC3490 K:LYDG:S::SMR:NGD::VDPV:-SI:::::S::::::Q::::::VD:::::Y:K:::: Hmu2184 :DA::::A::S:HQHG:::::LG:-A:V:::::Q::::::::::::H:::::DY:K:::: consensus GEVAAELDINTSTFTEHLAAAQSKLLDDILDE--------------- #oth 332.43.11572.131.122.231.1355168632111111111111 HQ1863A TT::D::G:GL::::::::V::R:::SEL:SQRV::::::::::::: Hut0702 EA::T:::VA:P::::::::::RN::EGF::GSDNQSDTTIQSSHGQ Hbo3768 T:::NA::::R:::A:::S::::::::S::EF::::::::::::::: HVO_B0159 T::::A::::R:::::::S::::::::T:::V::::::::::::::: rrnAC1193 :D::DA:::S::::::::::::R:::::L::SC:::::::::::::: hla0221 ::::ES:G:DR:::S::M::::R:::SAL::-::::::::::::::: VNG1488 QAL:DD:G:AP:::::::L:::R:::G:A:ETDGT:::::::::::: HVO_0492 T:::::::::Q:::S::::::LT:::G:V:E:G:::::::::::::: Hbo2878 T:I:::::::P::L:::::::E::::E:::--::::::::::::::: Hut0367 TD:::::::DG::::::::::::::M:EL:A:M:::::::::::::: NP1538A ::::D::G::SA:LRG::S::::::::EM:A-::::::::::::::: HVO_1117 :::::::G:T::::S::::M::K::MGA::Q:::::::::::::::: NP1564A ::::D::::T::::S::::::::::::A:::A::::::::::::::: rrnAC3490 :D::T::::SV:::A:::::::T::::S:VA:::::::::::::::: Hmu2184 ::::EA:::SV::LA:::::::T:::::V:P-:::::::::::::::