|
Pairwise sequence scores | |||||||
---|---|---|---|---|---|---|---|
Consensus score | 6500 | NP0540A | hla0947 | HQ1444A | VNG0537 | rrnAC2578 | Hmu2984 |
3932 | NP0540A | 6677 | 3363 | 3211 | 3345 | 3510 | 3436 |
4893 | hla0947 | 3363 | 6990 | 4552 | 4002 | 4165 | 4008 |
4528 | HQ1444A | 3211 | 4552 | 6527 | 3795 | 3942 | 3822 |
5084 | VNG0537 | 3345 | 4002 | 3795 | 6598 | 4632 | 4393 |
5259 | rrnAC2578 | 3510 | 4165 | 3942 | 4632 | 6516 | 4641 |
5140 | Hmu2984 | 3436 | 4008 | 3822 | 4393 | 4641 | 6538 |
970 symbols consensus -----------------MSADPRPTD-G--------------EA-SDEDADDLLQEIERK #oth 1111111111112222233543232142233332321233223344422323212....1 NP0540A ::::::::::::MTDASSDPED:::NT:TDADRSDE:RSPTDTVDAE::PENI:E::::: hla0947 MTTTNRTDGGIDDSNDGG:GG:P:G:L:SGSGADEPPDDRTD:EI:R:E::::IE::::R HQ1444A :::::::::::::::::::::TPSDNPRSSTETDN::DNVIQS:SDT::TTE:ID::::R VNG0537 :::::::::::::::::::N:HST:::-::::::::::::::--:-AP:::SV::::::: rrnAC2578 ::::::::::::::::::TENT:SD:D:::::::::::::::::V:::EV:EV::::::: Hmu2984 :::::::::::::::::--MT::I:::-::::::::::::::--:T:VA::::::::::: consensus RSLRGWAVVAVAAIGILFSVFQLWLAARGFVLSVSLPIVGTVRIA------SLQLLQINA #oth .1.21422231131.12..21.1211.212233232.421425231111111111..111 NP0540A ::::::S::L::VV:::::A::M::S::::IVE:TV:LA::Y::T:::::::FET:::RS hla0947 :::::P:AI:::I:::A::::::F::::SYTFTIW::T:DIAG:SIAPWQV::::::A:: HQ1444A :::T:I:A:IT::::V:::I:::L:::QS:TITLWA::::::N:-::::::::::::A:: VNG0537 :D:S:RI:L:::::::A::::::::::::S::::::::::S:TL:::::::K:::::::: rrnAC2578 :::T:::::L::L:::S:::::M::::K:::::I:::G::D:VF:::::::::::::::: Hmu2984 ::::RV:S:V:SIV:::::AY:M:F::::::FA:E::VL:E:EL:::::::::::::::: consensus IHVAFALVLTFLLYPASTGDGRLARRCGRLAAAVSARLGASHPVSRAIAAIGTGLAWAFL #oth 1..3.1.111...1.321.2.33214232355424321.53312331353324211.222 NP0540A V::T:::IMA:::::PL::A:::T:SI:GFLDV::N:V:G:--IAA:::FLRRAVR:FCF hla0947 :::::::::::::F:V:::::MVT:NF::I:P:A:Q:::DRS::T::LEGGR:::R:::: HQ1444A :::T:::::::::F::TM:E:FISQTFS:AHTT:VET::E:N:L:KV:THLA:V:R:::: VNG0537 V::::::::::::::::::::PV::::K::SE:AT::::S::::T:V:N:V:A:::::VV rrnAC2578 V::S:G:I:::::::G:::::P:S:::IA:GSL:DEK:::E:::::VVH:::SA:::::: Hmu2984 :::G:::::::::::G::::::F::A:SG:R:RTA::::PDS:LVS:MD:::D::::L:V consensus DPDRDRVTPSDILFIAVAVLSAAYFITDFAEIQR-MRVLGLEAGRPIQEVF--------- #oth .2232111.3.43212324.333..31214.11212.21.14311124112111111111 NP0540A ::NKE:I::L:G:L:VS:L:PVV::FRRYD:Y:NVI:::::QNAAT:D:I:::::::::: hla0947 ::::E::::V::::::::F:::F::M:E:::::N::::F:VDS:::VT::Y::::::::: HQ1444A ::N:R:I::F:VIS:IA:I:TTT::::::E::::::::F:::S:::VV:IY::::::::: VNG0537 :D:L:A:A:V::A:A::SA:A:V:::::::::RE:L:Y:::T::::LPT:WLGYLDVIRP rrnAC2578 :AEM:::::::FV::VLS:::::::V:::N:::::::A::::R::::::::::::::::: Hmu2984 :::L:::::::L:L:::T:::S:::V:::R:::::::A:::P:::::::::::::::::: consensus ------PFLNPLAGLLGPLADTSYALVLGVVGVLLVLEATRRAIGLPLMLIVAAFIVYAR #oth 11111123.3.32221122343.1.32..23.11........111.3.241.22.13.1. NP0540A :::::::A:E:::--V::::TY:V:YL::IL::::::::::::L::L:TGL:SI:VL:G: hla0947 ::::::A::Q::L:GVPFVSEY:::MI:::A:I:::::::::TL:::::::::T:::::: HQ1444A :::::::I:::VL:G:PIIG:I::::L:::I:I:::::::::TL:::::::::T::I::: VNG0537 VFDALS:V:::AGA:::::GH::::::::A:::V::::::::::S:W::C::::::A::: rrnAC2578 ::::::T::E:I:::::::::::::F:::A::::::::::::::S:W::V:::::V:::: Hmu2984 ::::::T::D:V:::::::TNV:::F::::::::::::::::::S:Y:VF::G::::::: consensus FGYLIPQDAAYLGLLAIPELSWPDIIQNLWYNTENGVFGIPVTVSVQFIYIFILFGAFLE #oth 2.1..1313132131111123.131111...11.1.1.....1..12...1.....1... NP0540A Y:::::S:M:GI:Q::VR:NR:DQV:SY:::TG:-:I:::::S:::R::::::::::::: hla0947 W::::SG:TPF:::::::P::::::V:::::::::::::::::::MS:::::::::S::: HQ1444A W::::STTTPL:::::::::T:::::::::::::::::::::::::S::::::::::::: VNG0537 ::::::::V:::QIIS::PFA::E::::::::::::::::::::::::::V::::::::: rrnAC2578 ::V::::::::I:V:S:::::::S:::::::::::::::::::::::::::::::::::: Hmu2984 ::V::::::::V:V:S::::T::S:V:::::::::::::::::::::::::::::::::: consensus MSGAGQWFIDLAYGATGTRKGGPAKASILASGFMGTISGSSIANTVTTGAFTIPLMKRSG #oth .....1....1..21..2.........111.....11....1...............1.. NP0540A :::::K::::F::SL::::::::::::VVS:::::ML::::V:::::::::::::::::: hla0947 ::::::::::::::L::D:::::::::::::::::::::::::::::::::::::::::: HQ1444A :::::::::::::AL::R:::::::::::::::::::::::::::::::::::::::Q:: VNG0537 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: rrnAC2578 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2984 :::::::::::::A:::::::::::::::::::::::::::::::::::::::::::::: consensus YSPEFAGAVEASASSGGQILPPVMGAAAFLIVQYTATPFADVIVAATIPAVVFFFGVWVM #oth .21..1.1..1.2.................1.1..2...1.1.13.1...21....1... NP0540A ::::::::::S:T:::::::::::::::::::E::G:::R:::::::::::A::::M::: hla0947 :D:::S::::::::::::::::::::::::M::::S:::::I:II:::::I::::::::: HQ1444A ::A::S::::S:S:::::::::::::::::M::::::::::I:IL::::::::::::::: VNG0537 :R:::::::::::::::::::::::::::::::::G::::::::::::::L::::::::: rrnAC2578 :::::S:G::::::::::::::::::::::::::::::::::::V:::::I::::::::: Hmu2984 :::::::G::S:::::::::::::::::::::::::::::::::::A::::::::::::: consensus VHFEAVKEDIGGLDADDLVNLRSHLKRGWFYLVPIALLLYYLIIERLSVSRSAWFTIVAI #oth ..11.3321...13533222224.233..1.12.13...1.1121...12.11.1.1112 NP0540A :::::A:H:::::AREQ:LD:KP:I:::::::F::V:::::IVGA:::IG:AG:L::::T hla0947 ::LK::Q:G:::VSGE:T::FWD:F::::::::::::::::::::::::::::::::::L HQ1444A ::LK::E:G:::V::AE:IS::E::LD::Y:II::::::F::::::::::::::::L:SL VNG0537 :::::G:::::::GT::::S:::::RT::::::::G:::::::V:::::A:::::::::: rrnAC2578 ::::::::::::::SSE:::::::F:S:::::::LG::::::::::::::::::::LI:: Hmu2984 :::::SRLG:::::P:SV:DI:R::WT::::::::F:::::::GA::::A::::::L::: consensus VALIALVAAYNDETRGRLGAVLAAIGGAELLSQALAGVGLVAALSGGGAGGLPLGGAFAA #oth 2.121..2..222..231424131352242113333.23123333.3233321434.431 NP0540A I:IV:::::::ER:::IIAGG::VALA:NIA:Y:T:::::ITLAF::SGES::VAA:LR: hla0947 :::V:::S::SE:::L::F::F:::V:V:FA:H:::::NV:GLVT:A:GA:::P:E::S: HQ1444A ::::T::G:::KD:::V:TLS::::I:V::::HSF:::SV:EFI::TR:NDM:ASV:IDT VNG0537 G::M::::::G:::::L::G::TVVT:GT::AEW:G:GS:::V:T:::::AQ:::::V:: rrnAC2578 G:::::::::G::::A::::I:GVLF::S::::F:F:A:VLG::A:D:T:SQS:ID::S: Hmu2984 ::::T:::::S:::::::V:L:L:L:LGQF:A:WST:AP:::::::::P:::SI:::A:: consensus TLGRIGWLAIAAGVLTLLSKPRLDASLLELDPAVDDTAEAISDAVGRP-LADNGLFRLGT #oth 312522321112112112321322122.31131.22112333312212332422231212 NP0540A G::DLDAI::LL::AV::YDRSGT:P::S::S::::::D::D:RL::::V:ASRAG:FA: hla0947 I:AG:E:Y:ML::::::::::D::::::::N:S:Q::::T:G:RTD:D::ENSQP:K::: HQ1444A V:P::::YI:::SI::::Y::KAVSAH:::N:S:LN:V:DV:SRTNAN:IG:YQ:::::A VNG0537 :::EL:::::::::I:MALR::A:::::GF:D::::::G:V:A:::::S::G:::::Y:V rrnAC2578 :V:N::T:I:LS:::::ITR::::SP::SF:G:::::::TTA::::::D::S:::YK::V Hmu2984 :::TV:R::::::::::::::::T::W:A::::::EA:DGL:T:::::AAG::::V:::: consensus FVLKSMEDGARTAVPVVIAVAAAGIIPGVISVSGLGPNLVSLILALAGGSLVILLLVTAI #oth .232..13.....11..1......1...1.121......22.143111..3.22.22112 NP0540A :I:::::A:::::TV::V::::::::::I:GLT::::::AR::VTVSA::F:V:::LAGV hla0947 ::VT:::Q:::::::::V:::::::::::::::::::::T::L:::S:::I::M:::::V HQ1444A :IFE:::::::::::::::::::::::::::::::::::T::L:V:S:::V::M:V:::F VNG0537 :T::::::::::::::::::::::V::::::I:::::::::::Q:V::::::VV:AI::: rrnAC2578 ::G::::S:::::::::::::::::::::::::::::::::::T:V::::::L::::::F Hmu2984 ::::::DS:::::::::V::::::::::::::::::::::A::RS:::::::L::VI::: consensus SSIILGMGMPTTVTYIILVSMLAPALVEFGIPLLAAHLFILYFGVIADITPPVAVAAYAA #oth 11.11........1....221.232132..1.1..1..1...1.11..1........1.. NP0540A :A::V::::::::M:::::A::GR:FP:::V::::V::Y:::L:LM::V::::::::F:: hla0947 ::::::::::::::::::I::::TP::::::::::::::::::::::::::::::::::: HQ1444A A::L::::::::::::::I::::SP::::::::::::::::::::::::::::::::::: VNG0537 ::::::::::::::::::SVL:V:V:LP::V:E:::::Y::::::::::::::::::::: rrnAC2578 ::::::::::::::::::::L:::::T:::V::::::::::::::::::::::::::::: Hmu2984 A:::::::::::::::::::::G::::T::::E::::::::::::::::::::::::::: consensus SGVAKSDPFETGIEAFSLSLNKAIVPFAFVLTPGIVLLRRK-NAAELPLREQYRVVGFAD #oth 1.1...1112.112..1.....11.....122..12.1.3242223214333222334.. NP0540A ::::::E:I::A:Q::L:::::IL::::::F::::M:::PDGDPG:T------NLLSW:: hla0947 ::I:::::::::VK:::::::::::::::::A:::::::E:A:::D::I::::::::::: HQ1444A ::::::::::::VK:::::::::::::::::A:::::::K:S:::::::::R:::IE::: VNG0537 A::::::::D::V:::::::::::::::::V:::VM::::-:::GS::PGD::S:::V:: rrnAC2578 :::::::A:::::::::::::::::::::IV::::I:I::-:----A:TDSG::I::T:: Hmu2984 ::I::::::Q:::::::::::::::::::::V:::::::E:DD::::::G::F::ATP:: consensus LLDLGYSVPEILIPIAGVFLGVVALAATVIGFLYAPVSRAERAAFAVSSLLLMAPGLLVS #oth 12121222..132.13.112..2..1311..3311313152.2321411.2.12.2.433 NP0540A VT:F:FF:::VVV::L:M:A::Y::GICI::YFR:::::VQ:VLYG:AA:::SV:::VLL hla0947 :AE:S:::::::::::::::::I::G:::::T::TR:G:LS::V::L:::::::::::SE HQ1444A ::::S:AI:::A:::I:::I:::::GV::::T::TE::TI::IG::T:::I::S:Q::WT VNG0537 :::V::::::VVL:::::V::::::::::::HV:TD:A::::V:Y:G:A:F::::T:I:T rrnAC2578 :::::::I::::::VI::::::::::::::::A::::::G::::::F::::::::::A:: Hmu2984 :::::W:L::VFV:VV::::::::::G:::::V:::LD:W:::GL::::::::::::P:: consensus AVYDILGLLGVSGGQTGLLADLLLRAVGLALFVALLARNR-RAADAEDPGATA-PA---- #oth 5441312.2.3223543233114..11.21213412411.11434535433324322211 NP0540A PTESL:::::::VVLET:A::::::G::A:::IT::EKG:::EGRK:S:SEP:S:TAS:: hla0947 S:F:T:::V:::VSVNA::L::T:::::FV:::LFAL:::::TL:G:GD::GETD:TTGS HQ1444A LII:::T:::T:LMM::SVIE:I::GI::::::I:AT::::KD:AI-------:--:::: VNG0537 TAN:V::::::A:::::VVV::G:::I::VV:A:::V::::::ST::E:A:--:--:::: rrnAC2578 G:::::::I:IA::EMTV:L:IV::G::::::LF:M:K::Q:GG:PAVRSG::E:::::: Hmu2984 :G::VTA:::LG::SVS:T:::::::::::ML:::::K::::::PRG:S::::DA::::: consensus ---------- #oth 1111111111 NP0540A :::::::::: hla0947 TEAVAASDSS HQ1444A :::::::::: VNG0537 :::::::::: rrnAC2578 :::::::::: Hmu2984 ::::::::::