|
Pairwise sequence scores | |||||||||
---|---|---|---|---|---|---|---|---|---|
Consensus score | 2099 | HVO_A0396 | VNG6400 | hla2124 | HVO_1743 | Hut1828 | Hmu2389 | HVO_1735 | NP3842A |
1697 | HVO_A0396 | 2104 | 1768 | 1820 | 854 | 911 | 698 | 688 | 675 |
1702 | VNG6400 | 1768 | 2114 | 1876 | 789 | 888 | 708 | 699 | 644 |
1739 | hla2124 | 1820 | 1876 | 2107 | 827 | 904 | 741 | 719 | 679 |
1039 | HVO_1743 | 854 | 789 | 827 | 2028 | 1237 | 599 | 660 | 607 |
1083 | Hut1828 | 911 | 888 | 904 | 1237 | 2044 | 580 | 657 | 582 |
943 | Hmu2389 | 698 | 708 | 741 | 599 | 580 | 5024 | 1780 | 1773 |
939 | HVO_1735 | 688 | 699 | 719 | 660 | 657 | 1780 | 5069 | 3466 |
878 | NP3842A | 675 | 644 | 679 | 607 | 582 | 1773 | 3466 | 5114 |
701 symbols consensus ----------------MDPTRDAIRDICTDAVFERGERYREDGRIQEIDRFGTTVTATVS #oth 1111111111111112352213411231.211.1..34.34211125132514423.212 HVO_A0396 ::::::::::::::::::V:E::V:::::::::::::::::E:::HG:H:ID:::::V:: VNG6400 :::::::::::::::::EV:E::V:::::::::::::::LA::C:H::H:VDS::I:V:: hla2124 ::::::::::::::::::V:E::V:::::::::::::::LAE:::H::H:VD:::::V:: HVO_1743 :::::::::::::::::NID:ERVKNRS::::::::VN::DE::::QL::::EL::::I: Hut1828 :::::::::::::::::QIDEAW:::R:::::::::QH::T::::RR:::::DV:::I:Q Hmu2389 MTRSDPDSELDPDSRDLT:::::::S:::AQS:Q::VE:V::::VRDLTVT::EAE:::R HVO_1735 :::::::::::::::MDY:A::E::SL::EQS::::AN:YHQD::::L:ID:SEIR:::R NP3842A :::::::::::::::MEY:::SK::SF::EQS::::VK:Y:QD:::KLEVE:GDI::I:R consensus GSRQYDVRVDLATDGFAPRCDCPYDGPGDCKHVVAVLLRCVDDPPEDEGDR--------- #oth ..43.12311254532433.2....22.3...1.....4242321445312123311111 HVO_A0396 :::::::::::::N::::W:::::::::T::::::::::::::::Q:::::::::::::: VNG6400 ::::::::::::::::T:W:::::::::A::::::::::::::::PN::::::::::::: hla2124 :::::::::::::G::::W:::::::::A::::::::::::::::S:N:::::::::::: HVO_1743 ::KL:::T:EFGGRSIDA::T:::::G:::::::::::DIAAS::Q::SE:::::::::: Hut1828 ::S::::T:E:DESNIES::T:::::::::::::::::EIAA:::A:DSE:::::::::: Hmu2389 ::HD:RTA:::SVE::D:Q:S::::HA:E:::::::::TVIEQSA:LFDEHAEHDFGVPD HVO_1735 ::NY:::AI:IVD::VRS::S::::YA:::::::::::AVD:RD::TMS:T::DP::::: NP3842A :::D::ISI:IED:TIRTV:S::::YA:::::I:::::AVE:RS::STAETADSS::::: consensus ------------------VEAALDGADADELRAFLRDELAEDADLRDRFLARVGEPTRKS #oth 1111111111122222222232224232221.2.21232132532.11.11231244431 HVO_A0396 ::::::::::::::::::LDT::N::::::::::::E:::T::::::Q:::::S:S:TR: VNG6400 ::::::::::::::::::LD:::::V:::::::::::::VA::N::::::::::::::Q: hla2124 ::::::::::::::::::LD:::G::::::::::::::::T:T:::::::::::::M:Q: HVO_1743 :::::::::::::::::::::VI:DVS:ED::G:A::A:::HPE::EQ::::F:DDH:-: Hut1828 :::::::::::::::::::T:V::DVSPAD::::V:AV:::RPA::::::::Y:DAAV-: Hmu2389 HEMLTSGVAVDDRSTRHA::R:V:E::PETM::::::V::::S:R:EQ::VA::T:AE:: HVO_1735 :::::::::::ERNETVDI:SLV:QTT:ED:::::L:IV:A:Q:I::::V:F:::D:G:T NP3842A :::::::::::DNSETVD:::LI:RTPD::::T::L:II:D:R:I::::V:FA::EPG:T consensus VDELRTEIDRLFEQANPRYGVVF--EPIDFSQWFDLAEEYRERGRHASAATVYRALAESI #oth 1311143.222.1233434331322241..3124131341.2223553.222...24141 HVO_A0396 ::::::T:::R::ET::E:Y::::::::::TR:::::T::::Q::Y::::::::::V::L VNG6400 ::::::A:::R::ET::E:H::::::::::T::::::N::::Q::D::::::::::V::L hla2124 ::::::S:::R::ET::E:H::::::::::T::::::N:H::Q::A::::::::::T::L HVO_1743 :E:Y:E::AQ::::HAD--P::::::A::::RFLEI::Q::D:E:YLA:::::::VF:E: Hut1828 FE:::D::EA::D:YTQDHPA:T::DA:::WRF:EM::R::::D::FA::A::::IFTA: Hmu2389 :ADY:R::::K::::TD:R:I:AYDTQL::R:YY:R:DT:::H:D:ER:L:I::::::G: HVO_1735 :YDYKQ::::::DD:VS:R:M:EHGTH:::::YT::::TH::::HVDT:TDI:::VS:G: NP3842A :YDYKQ:::::::D:AG:G:MIEYDTR:::::YH::V:MH:S::NIGT:TDL::::::T: consensus DENMERIDGAYDHYARALSRALDGYVDCVAAAERDAEAVTDAVAFL-------------- #oth 2213311.1121.2222222.213111114343534223343343.23223322221222 HVO_A0396 :D::::V::::::FS::F::::::::::::FRG::-D::::::::::::::::::::::: VNG6400 :D::::V::::::FS::F:::I:E::::::T:::::D::::::::::::::::::::::: hla2124 ::::::V::::::FS::F:::::::::::::T::::D::::::::::::::::::::::: HVO_1743 ::KYNW:::::::::K:IQT:::::A:::L:TNPTP:EFDTYAGV::::::::::::::: Hut1828 :::EG::::::::H::::QS:::::::::I::DL:Q:RFETYAGV::::::::::::::: Hmu2389 QQ:LD:::DSGG:::GQIE::M:VA:::INEM:S:::RRREFLDT:FEQYEATEYAFVME HVO_1735 R::LD:V:DSSG::G:E:E::IEA:AET::EQ:FEH:RKELYIQY:CAEFVGADHGFASD NP3842A R:::N:::DSSG::G:E::::IE::AETITEQGYGHPEKRPHIEY:FGEFIDADYGFASE consensus ---------------------------------------------------------EER #oth 212311122122311112222212212222322122122222122232312222111423 HVO_A0396 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::D:: VNG6400 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2124 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::T:: HVO_1743 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::A: Hut1828 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::A:L Hmu2389 YYDDALRSICETTADLEHLRSLLEPHLPSPVAE:::::::::::GDKRMDETE::::TSE HVO_1735 DYDGALRTVCTEDADLEYWLEQLDAHVSGVTLD:AVLSGELSSKTDDRRDETED:::SAD NP3842A DYAEALRTICTTRADLEYWLELLDAHVSGVDLEPGALEASVGSSTETTQDDVQEDISSSE consensus ATSGS-----------------------------PLLAEHF------------------- #oth 433131122222112211121112111321223213321411113112221222213332 HVO_A0396 ::::T::::::::::::::::::::::::::::::F:T:::::::::::::::::::::: VNG6400 ::::T::::::::::::::::::::::::::::::F:::::::::::::::::::::::: hla2124 :V::T::::::::::::::::::::::::::::::F:::::::::::::::::::::::: HVO_1743 ::AEP:::::::::::::::::::::::::::::RIND:Q:::::::::::::::::::: Hut1828 SSA::::::::::::::::::::::::::::::::VND:R:::::::::::::::::::: Hmu2389 GDE:G::::::::::::::::::::::LPDPTRDR:D:DLLTGGVLDIDRLSESPLDVSD HVO_1735 TSD:::ARDDGSTDHP:::ERTDDVLYASDFTDG::STDD:TGGALDVEHLAVGTLQFEY NP3842A P:D::NAQSEDETDTTVENGRTDNVLYTSDFATG::STDD:TGGTLDVEHLAVGPLEIGY consensus ------------------------------------------------------------ #oth 111222211111222222322333233313323222223212112311122212112222 HVO_A0396 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG6400 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2124 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_1743 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1828 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2389 FVGETL::::::ATKLASTEAGGATAGDSQHSQTGLSAEAQT::VVSTYAWVLSELDENE HVO_1735 FVGDAFEELRVDEPTTVEKHTARVELTKSGTTDTDISSSLQKRRIFSTYVYILEELGDED NP3842A FVGDAFDELRVDAPTTVERHTVEIESPESSASESDLASKLQKRRVLSTYVYVLEELGEED consensus ------------------------------------------------------------ #oth 213322122221322212312221233232211322213122212232212221212122 HVO_A0396 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG6400 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2124 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_1743 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1828 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2389 ALRAVLEPVATETPTLCCRYVEALLADGSDERAPAALECGLDRFGHSRELHRFAADCYRD HVO_1735 ALSQLYEEIYLESKRFCKEYARRLIDEGNENRAIEVVEDGIHTFRSARELRWLAADLYED NP3842A VLDTLYEEIYLEDKRFCKAYAERLIEQDDEERALEVVEHGIDTFRSTTDLRWLAVDLYRN consensus ------------------------------------------------------------ #oth 123231222122212223213111212321313113122222223232312321232122 HVO_A0396 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: VNG6400 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: hla2124 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: HVO_1743 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hut1828 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Hmu2389 RDDERYRDLLQTMFVRFADWEAYDELVSACPDDEWESVFHGLVSQLGRLDADRLIDLYIR HVO_1735 RDMDEYRATLKQLFLDHTEWAAYDDLKTICDDQEWQSIYGEFERHFERDDRKDLVALYVH NP3842A REPDKYKALLKQLFLDHSEWDAYDELKEACTDREWASIYGEFERTLDQRDRQRLISMYVH consensus ----EKALVELQEKADEQSCR--------------------------------------- #oth 232211.35214145433353212222123213211131113132221221112111322 HVO_A0396 :::::::V:::::::::::FE::::::::::::::::::::::::::::::::::::::: VNG6400 :::::::A:::R::LG::::E::::::::::::::::::::::::::::::::::::::: hla2124 :::::::A::::::I:::::K::::::::::::::::::::::::::::::::::::::: HVO_1743 ::::RR::DD:E:RYE-----::::::::::::::::::::::::::::::::::::::: Hut1828 ::::RR::E::E:RR------::::::::::::::::::::::::::::::::::::::: Hmu2389 EGER::::SRVLDGE:PELL:QYQTDLADLDPEAYFETYREVLASHLADDTGRDHYRAVI HVO_1735 DDDL:R:FA::K:N::LS:V:QYRDPVATTAPVEYFELYRELLVPFAAGDTGRRHYRDIA NP3842A EMDL:::FF::K:AENLSWM:RYQDPVATVDPIEYFEMYREQLIPFAAGETGRRHYREIA consensus ----------------------------------------- #oth 21122122123222122113212221111112111122121 HVO_A0396 ::::::::::::::::::::::::::::::::::::::::: VNG6400 ::::::::::::::::::::::::::::::::::::::::: hla2124 ::::::::::::::::::::::::::::::::::::::::: HVO_1743 ::::::::::::::::::::::::::::::::::::::::: Hut1828 ::::::::::::::::::::::::::::::::::::::::: Hmu2389 GHLREMSQLAFDEELAAFVARLRESHSNRPALLDELDDARF HVO_1735 DHLEEMQGLVPEARLEEFVDFLKDKHSNRPAFLDELEKAGF NP3842A DHLESMQGLVSDARLEEFVEFLKDKHSNRPAFLDELEKAGF